IL_8Y0W_270
3D structure
- PDB id
- 8Y0W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with eIF5A, eEF2 and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0W_270 not in the Motif Atlas
- Homologous match to IL_8C3A_472
- Geometric discrepancy: 0.1201
- The information below is about IL_8C3A_472
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
8Y0W|1|S2|G|1706
8Y0W|1|S2|U|1707
8Y0W|1|S2|C|1708
*
8Y0W|1|S2|G|1826
8Y0W|1|S2|U|1827
8Y0W|1|S2|C|1828
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CB
- Elongation factor 2
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- 60S ribosomal protein L41
- Chain S
- Isoform 2 of SERPINE1 mRNA-binding protein 1
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