3D structure

PDB id
8Y0W (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with eIF5A, eEF2 and SERBP1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UUA*UUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Y0W_275 not in the Motif Atlas
Homologous match to IL_8C3A_477
Geometric discrepancy: 0.0946
The information below is about IL_8C3A_477
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_10289.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
237

Unit IDs

8Y0W|1|S2|U|1729
8Y0W|1|S2|U|1730
8Y0W|1|S2|A|1731
*
8Y0W|1|S2|U|1803
8Y0W|1|S2|U|1804
8Y0W|1|S2|G|1805

Current chains

Chain S2
18S rRNA

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain LV
60S ribosomal protein L23
Chain SI
40S ribosomal protein S8

Coloring options:


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