IL_8Y0W_282

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGC*GUC

Length

7 nucleotides

Bulged bases

8Y0W|1|L5|C|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0W_282 not in the Motif Atlas

Geometric match to IL_8E4X_001

Geometric discrepancy: 0.2564

The information below is about IL_8E4X_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8Y0W|1|L5|G|448
8Y0W|1|L5|C|449
8Y0W|1|L5|G|450
8Y0W|1|L5|C|451
*
8Y0W|1|L5|G|1296
8Y0W|1|L5|U|1297
8Y0W|1|L5|C|1298

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a