IL_8Y0W_297

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0W_297 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.3248

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8Y0W|1|S2|A|533
8Y0W|1|S2|G|534
*
8Y0W|1|S2|C|549
8Y0W|1|S2|C|550
8Y0W|1|S2|U|551

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain Se

40S ribosomal protein S30