IL_8Y0X_005

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_005 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.131

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8Y0X|1|L5|G|16
8Y0X|1|L5|A|17
8Y0X|1|L5|C|18
*
8Y0X|1|L8|G|139
8Y0X|1|L8|C|140
8Y0X|1|L8|C|141

Current chains

Chain L5

28S rRNA

Chain L8

5.8S rRNA

Nearby chains

Chain LN

60S ribosomal protein L15

Chain LX

60S ribosomal protein L23a

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37