IL_8Y0X_029

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

8Y0X|1|L5|C|501, 8Y0X|1|L5|C|502, 8Y0X|1|L5|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_029 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2173

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8Y0X|1|L5|G|500
8Y0X|1|L5|C|501
8Y0X|1|L5|C|502
8Y0X|1|L5|C|503
8Y0X|1|L5|G|504
8Y0X|1|L5|G|505
*
8Y0X|1|L5|U|653
8Y0X|1|L5|C|654

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18