IL_8Y0X_047

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_047 not in the Motif Atlas

Geometric match to IL_4WF9_083

Geometric discrepancy: 0.1795

The information below is about IL_4WF9_083

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8Y0X|1|L5|G|1094
8Y0X|1|L5|A|1095
8Y0X|1|L5|C|1096
*
8Y0X|1|L5|G|1199
8Y0X|1|L5|G|1200
8Y0X|1|L5|U|1201

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain LT

60S ribosomal protein L21