IL_8Y0X_055

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_055 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3013

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8Y0X|1|L5|G|1425
8Y0X|1|L5|G|1426
8Y0X|1|L5|A|1427
8Y0X|1|L5|U|1428
8Y0X|1|L5|C|1429
*
8Y0X|1|L5|G|1455
8Y0X|1|L5|C|1456
8Y0X|1|L5|G|1457
8Y0X|1|L5|C|1458
8Y0X|1|L5|A|1459
8Y0X|1|L5|C|1460

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain Lb

60S ribosomal protein L29