IL_8Y0X_078

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUGG*UCA

Length

7 nucleotides

Bulged bases

8Y0X|1|L5|U|1757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_078 not in the Motif Atlas

Geometric match to IL_4ZC7_004

Geometric discrepancy: 0.2757

The information below is about IL_4ZC7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8Y0X|1|L5|U|1756
8Y0X|1|L5|U|1757
8Y0X|1|L5|G|1758
8Y0X|1|L5|G|1759
*
8Y0X|1|L5|U|1773
8Y0X|1|L5|C|1774
8Y0X|1|L5|A|1775

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like