IL_8Y0X_100

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_100 not in the Motif Atlas

Geometric match to IL_5T83_003

Geometric discrepancy: 0.3887

The information below is about IL_5T83_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

8Y0X|1|L5|A|2477
8Y0X|1|L5|C|2478
8Y0X|1|L5|G|2479
*
8Y0X|1|L5|C|2499
8Y0X|1|L5|U|2500

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LX

60S ribosomal protein L23a