IL_8Y0X_113

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8Y0X|1|L5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_113 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.0982

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8Y0X|1|L5|A|2850
8Y0X|1|L5|G|2851
8Y0X|1|L5|U|2852
8Y0X|1|L5|C|2853
8Y0X|1|L5|G|2854
8Y0X|1|L5|G|2855
*
8Y0X|1|L5|C|3837
8Y0X|1|L5|U|3838
8Y0X|1|L5|G|3839
8Y0X|1|L5|U|3840

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23