IL_8Y0X_151

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8Y0X|1|L5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_151 not in the Motif Atlas

Geometric match to IL_4WF9_054

Geometric discrepancy: 0.366

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8Y0X|1|L5|C|4582
8Y0X|1|L5|C|4583
8Y0X|1|L5|A|4584
8Y0X|1|L5|U|4585
*
8Y0X|1|L5|A|4717
8Y0X|1|L5|G|4718
8Y0X|1|L5|G|4719
8Y0X|1|L5|C|4720
8Y0X|1|L5|G|4721

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a