3D structure

PDB id
8Y0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dormant ribosome with SERBP1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UGGU*AA
Length
6 nucleotides
Bulged bases
8Y0X|1|S2|G|113, 8Y0X|1|S2|G|114
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Y0X_193 not in the Motif Atlas
Geometric match to IL_5WLH_001
Geometric discrepancy: 0.1264
The information below is about IL_5WLH_001
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_82107.5
Basepair signature
cWW-cWW
Number of instances in this motif group
31

Unit IDs

8Y0X|1|S2|U|112
8Y0X|1|S2|G|113
8Y0X|1|S2|G|114
8Y0X|1|S2|U|115
*
8Y0X|1|S2|A|348
8Y0X|1|S2|A|349

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SE
40S ribosomal protein S4, X isoform
Chain SI
40S ribosomal protein S8
Chain SL
40S ribosomal protein S11

Coloring options:


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