IL_8Y0X_231

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_231 not in the Motif Atlas

Homologous match to IL_4V88_427

Geometric discrepancy: 0.3017

The information below is about IL_4V88_427

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8Y0X|1|S2|C|879
8Y0X|1|S2|G|880
8Y0X|1|S2|G|881
*
8Y0X|1|S2|C|905
8Y0X|1|S2|U|906
8Y0X|1|S2|G|907

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SL

40S ribosomal protein S11