IL_8Y0X_270
3D structure
- PDB id
- 8Y0X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dormant ribosome with SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0X_270 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.0871
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8Y0X|1|S2|G|1702
8Y0X|1|S2|C|1703
8Y0X|1|S2|C|1704
8Y0X|1|S2|C|1705
*
8Y0X|1|S2|G|1829
8Y0X|1|S2|U|1830
8Y0X|1|S2|A|1831
8Y0X|1|S2|A|1832
8Y0X|1|S2|C|1833
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CB
- Elongation factor 2
- Chain Ln
- 60S ribosomal protein L41
- Chain S
- Isoform 2 of SERPINE1 mRNA-binding protein 1
Coloring options: