IL_8Y36_020

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8Y36|1|A|G|846, 8Y36|1|A|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y36_020 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0644

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8Y36|1|A|G|719
8Y36|1|A|A|720
8Y36|1|A|A|721
8Y36|1|A|A|722
8Y36|1|A|C|723
*
8Y36|1|A|G|844
8Y36|1|A|A|845
8Y36|1|A|G|846
8Y36|1|A|A|847
8Y36|1|A|U|848
8Y36|1|A|A|849
8Y36|1|A|G|850
8Y36|1|A|C|851

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain J

Large ribosomal subunit protein uL15