IL_8Y36_039
3D structure
- PDB id
- 8Y36 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GGAAAAG*CGAAAAUGUACCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8Y36|1|A|A|1171, 8Y36|1|A|U|1174
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y36_039 not in the Motif Atlas
- Geometric match to IL_4WF9_040
- Geometric discrepancy: 0.1188
- The information below is about IL_4WF9_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8Y36|1|A|G|1068
8Y36|1|A|G|1069
8Y36|1|A|A|1070
8Y36|1|A|A|1071
8Y36|1|A|A|1072
8Y36|1|A|A|1073
8Y36|1|A|G|1074
*
8Y36|1|A|C|1168
8Y36|1|A|G|1169
8Y36|1|A|A|1170
8Y36|1|A|A|1171
8Y36|1|A|A|1172
8Y36|1|A|A|1173
8Y36|1|A|U|1174
8Y36|1|A|G|1175
8Y36|1|A|U|1176
8Y36|1|A|A|1177
8Y36|1|A|C|1178
8Y36|1|A|C|1179
8Y36|1|A|G|1180
8Y36|1|A|G|1181
8Y36|1|A|G|1182
8Y36|1|A|G|1183
8Y36|1|A|C|1184
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL36
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Large ribosomal subunit protein uL3
- Chain H
- Large ribosomal subunit protein uL13
- Chain K
- Large ribosomal subunit protein uL16
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