IL_8Y36_055

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AUAG*UGAUU

Length

9 nucleotides

Bulged bases

8Y36|1|A|U|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y36_055 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.2008

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8Y36|1|A|A|1481
8Y36|1|A|U|1482
8Y36|1|A|A|1483
8Y36|1|A|G|1484
*
8Y36|1|A|U|1598
8Y36|1|A|G|1599
8Y36|1|A|A|1600
8Y36|1|A|U|1601
8Y36|1|A|U|1602

Current chains

Chain A

23S ribosomal RNA

Nearby chains