3D structure

PDB id
8Y36 (explore in PDB, NAKB, or RNA 3D Hub)
Description
cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.65 Å

Loop

Sequence
UUGAG*CAAGAUGAG
Length
14 nucleotides
Bulged bases
8Y36|1|A|G|2807
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Y36_101 not in the Motif Atlas
Homologous match to IL_4WF9_099
Geometric discrepancy: 0.0645
The information below is about IL_4WF9_099
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.4
Basepair signature
cWW-tSH-tHW-tHS-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

8Y36|1|A|U|2663
8Y36|1|A|U|2664
8Y36|1|A|G|2665
8Y36|1|A|A|2666
8Y36|1|A|G|2667
*
8Y36|1|A|C|2801
8Y36|1|A|A|2802
8Y36|1|A|A|2803
8Y36|1|A|G|2804
8Y36|1|A|A|2805
8Y36|1|A|U|2806
8Y36|1|A|G|2807
8Y36|1|A|A|2808
8Y36|1|A|G|2809

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain D
Large ribosomal subunit protein uL3
Chain H
Large ribosomal subunit protein uL13

Coloring options:


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