IL_8Y36_103

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y36_103 not in the Motif Atlas

Homologous match to IL_7RQB_104

Geometric discrepancy: 0.0725

The information below is about IL_7RQB_104

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

8Y36|1|A|C|2707
8Y36|1|A|C|2708
8Y36|1|A|U|2709
8Y36|1|A|C|2710
8Y36|1|A|U|2711
*
8Y36|1|A|A|2752
8Y36|1|A|U|2753
8Y36|1|A|G|2754

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain I

Large ribosomal subunit protein uL14

Chain N

Large ribosomal subunit protein bL19