IL_8Y37_008
3D structure
- PDB id
- 8Y37 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.53 Å
Loop
- Sequence
- GAGAACUG*CUUAGUACC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y37_008 not in the Motif Atlas
- Homologous match to IL_4WF9_008
- Geometric discrepancy: 0.0672
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8Y37|1|A|G|190
8Y37|1|A|A|191
8Y37|1|A|G|192
8Y37|1|A|A|193
8Y37|1|A|A|194
8Y37|1|A|C|195
8Y37|1|A|U|196
8Y37|1|A|G|197
*
8Y37|1|A|C|204
8Y37|1|A|U|205
8Y37|1|A|U|206
8Y37|1|A|A|207
8Y37|1|A|G|208
8Y37|1|A|U|209
8Y37|1|A|A|210
8Y37|1|A|C|211
8Y37|1|A|C|212
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34
- Chain 3
- Large ribosomal subunit protein bL35
- Chain J
- Large ribosomal subunit protein uL15
- Chain V
- Large ribosomal subunit protein bL28
Coloring options: