IL_8Y37_088

3D structure

PDB id

8Y37 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y37_088 not in the Motif Atlas

Homologous match to IL_4WF9_087

Geometric discrepancy: 0.0936

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

8Y37|1|A|C|2377
8Y37|1|A|G|2378
8Y37|1|A|A|2379
8Y37|1|A|G|2380
*
8Y37|1|A|C|2391
8Y37|1|A|G|2392
8Y37|1|A|A|2393
8Y37|1|A|G|2394

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL35

Chain U

Large ribosomal subunit protein bL27