IL_8Y38_023
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8Y38|1|A|G|846, 8Y38|1|A|G|850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y38_023 not in the Motif Atlas
- Homologous match to IL_4WF9_021
- Geometric discrepancy: 0.0972
- The information below is about IL_4WF9_021
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
8Y38|1|A|G|719
8Y38|1|A|A|720
8Y38|1|A|A|721
8Y38|1|A|A|722
8Y38|1|A|C|723
*
8Y38|1|A|G|844
8Y38|1|A|A|845
8Y38|1|A|G|846
8Y38|1|A|A|847
8Y38|1|A|U|848
8Y38|1|A|A|849
8Y38|1|A|G|850
8Y38|1|A|C|851
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL4
- Chain J
- Large ribosomal subunit protein uL15
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