IL_8Y38_046

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GCG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_046 not in the Motif Atlas

Geometric match to IL_2ZNI_001

Geometric discrepancy: 0.1458

The information below is about IL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8Y38|1|A|G|1081
8Y38|1|A|C|1082
8Y38|1|A|G|1083
*
8Y38|1|A|C|1160
8Y38|1|A|A|1161
8Y38|1|A|C|1162

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein uL6

Chain K

Large ribosomal subunit protein uL16

Chain T

Large ribosomal subunit protein bL25