IL_8Y38_050

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8Y38|1|A|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_050 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1349

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

8Y38|1|A|C|1246
8Y38|1|A|G|1247
8Y38|1|A|U|1248
8Y38|1|A|U|1249
8Y38|1|A|G|1250
8Y38|1|A|A|1251
8Y38|1|A|A|1252
8Y38|1|A|G|1253
*
8Y38|1|A|U|1272
8Y38|1|A|G|1273
8Y38|1|A|G|1274
8Y38|1|A|A|1275
8Y38|1|A|G|1276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein bL20