IL_8Y38_057

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GGAUAG*UGAUUUC

Length

13 nucleotides

Bulged bases

8Y38|1|A|U|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_057 not in the Motif Atlas

Geometric match to IL_6DVK_004

Geometric discrepancy: 0.3811

The information below is about IL_6DVK_004

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8Y38|1|A|G|1479
8Y38|1|A|G|1480
8Y38|1|A|A|1481
8Y38|1|A|U|1482
8Y38|1|A|A|1483
8Y38|1|A|G|1484
*
8Y38|1|A|U|1598
8Y38|1|A|G|1599
8Y38|1|A|A|1600
8Y38|1|A|U|1601
8Y38|1|A|U|1602
8Y38|1|A|U|1603
8Y38|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains