IL_8Y38_152

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

AAGAG*UGGU

Length

9 nucleotides

Bulged bases

8Y38|1|a|A|673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_152 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.1045

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8Y38|1|a|A|670
8Y38|1|a|A|671
8Y38|1|a|G|672
8Y38|1|a|A|673
8Y38|1|a|G|674
*
8Y38|1|a|U|748
8Y38|1|a|G|749
8Y38|1|a|G|750
8Y38|1|a|U|751

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain f

Small ribosomal subunit protein bS6

Chain o

Small ribosomal subunit protein uS15

Chain r

Small ribosomal subunit protein bS18