IL_8Y38_169

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

8Y38|1|a|U|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_169 not in the Motif Atlas

Geometric match to IL_6CZR_158

Geometric discrepancy: 0.3003

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8Y38|1|a|G|1135
8Y38|1|a|U|1136
8Y38|1|a|U|1137
8Y38|1|a|G|1138
*
8Y38|1|a|C|1155
8Y38|1|a|A|1156
8Y38|1|a|C|1157
8Y38|1|a|U|1158
8Y38|1|a|C|1159

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

Small ribosomal subunit protein uS9

Chain j

Small ribosomal subunit protein uS10