IL_8Y38_171

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

8Y38|1|a|U|1169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_171 not in the Motif Atlas

Geometric match to IL_4LFB_050

Geometric discrepancy: 0.2279

The information below is about IL_4LFB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32376.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8Y38|1|a|C|1168
8Y38|1|a|U|1169
8Y38|1|a|G|1170
8Y38|1|a|C|1171
*
8Y38|1|a|G|1185
8Y38|1|a|A|1186
8Y38|1|a|G|1187
8Y38|1|a|G|1188
8Y38|1|a|A|1189
8Y38|1|a|A|1190
8Y38|1|a|G|1191

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

Small ribosomal subunit protein uS2

Chain i

Small ribosomal subunit protein uS9