IL_8Y38_173

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GCAG*CAAAUC

Length

10 nucleotides

Bulged bases

8Y38|1|a|A|1267, 8Y38|1|a|A|1290, 8Y38|1|a|U|1291

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_173 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1303

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8Y38|1|a|G|1265
8Y38|1|a|C|1266
8Y38|1|a|A|1267
8Y38|1|a|G|1268
*
8Y38|1|a|C|1287
8Y38|1|a|A|1288
8Y38|1|a|A|1289
8Y38|1|a|A|1290
8Y38|1|a|U|1291
8Y38|1|a|C|1292

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

Small ribosomal subunit protein uS3

Chain j

Small ribosomal subunit protein uS10

Chain n

Small ribosomal subunit protein uS14B