IL_8Y38_176

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8Y38|1|a|C|1410, 8Y38|1|a|A|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y38_176 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1558

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8Y38|1|a|C|1409
8Y38|1|a|C|1410
8Y38|1|a|G|1411
*
8Y38|1|a|C|1512
8Y38|1|a|A|1513
8Y38|1|a|A|1514
8Y38|1|a|G|1515

Current chains

Chain a

16S ribosomal RNA

Nearby chains