IL_8Y39_017
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCAC*GAGUGAAAUAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 8Y39|1|A|U|549, 8Y39|1|A|A|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y39_017 not in the Motif Atlas
- Homologous match to IL_4WF9_015
- Geometric discrepancy: 0.0994
- The information below is about IL_4WF9_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 10
Unit IDs
8Y39|1|A|G|527
8Y39|1|A|C|528
8Y39|1|A|A|529
8Y39|1|A|C|530
*
8Y39|1|A|G|541
8Y39|1|A|A|542
8Y39|1|A|G|543
8Y39|1|A|U|544
8Y39|1|A|G|545
8Y39|1|A|A|546
8Y39|1|A|A|547
8Y39|1|A|A|548
8Y39|1|A|U|549
8Y39|1|A|A|550
8Y39|1|A|G|551
8Y39|1|A|A|552
8Y39|1|A|A|553
8Y39|1|A|C|554
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain Q
- Large ribosomal subunit protein uL22
- Chain S
- Large ribosomal subunit protein uL24
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