IL_8Y39_028
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8Y39|1|A|C|821, 8Y39|1|A|A|833, 8Y39|1|A|A|834, 8Y39|1|A|U|835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y39_028 not in the Motif Atlas
- Homologous match to IL_4WF9_027
- Geometric discrepancy: 0.1457
- The information below is about IL_4WF9_027
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_89509.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
8Y39|1|A|G|820
8Y39|1|A|C|821
8Y39|1|A|G|822
*
8Y39|1|A|C|832
8Y39|1|A|A|833
8Y39|1|A|A|834
8Y39|1|A|U|835
8Y39|1|A|C|836
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34
- Chain C
- Large ribosomal subunit protein uL2
- Chain E
- Large ribosomal subunit protein uL4
- Chain Q
- Large ribosomal subunit protein uL22
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