IL_8Y39_050

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8Y39|1|A|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_050 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1348

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

8Y39|1|A|C|1246
8Y39|1|A|G|1247
8Y39|1|A|U|1248
8Y39|1|A|U|1249
8Y39|1|A|G|1250
8Y39|1|A|A|1251
8Y39|1|A|A|1252
8Y39|1|A|G|1253
*
8Y39|1|A|U|1272
8Y39|1|A|G|1273
8Y39|1|A|G|1274
8Y39|1|A|A|1275
8Y39|1|A|G|1276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein bL20