IL_8Y39_072

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_072 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.149

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

8Y39|1|A|A|1883
8Y39|1|A|G|1884
8Y39|1|A|G|1885
8Y39|1|A|A|1886
8Y39|1|A|G|1887
*
8Y39|1|A|C|1909
8Y39|1|A|G|1910
8Y39|1|A|A|1911
8Y39|1|A|A|1912
8Y39|1|A|U|1913

Current chains

Chain A

23S ribosomal RNA

Nearby chains