IL_8Y39_101

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

8Y39|1|A|A|2569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_101 not in the Motif Atlas

Homologous match to IL_4WF9_097

Geometric discrepancy: 0.1163

The information below is about IL_4WF9_097

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

8Y39|1|A|U|2549
8Y39|1|A|G|2550
*
8Y39|1|A|C|2567
8Y39|1|A|A|2568
8Y39|1|A|A|2569
8Y39|1|A|G|2570

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36

Chain H

Large ribosomal subunit protein uL13