IL_8Y39_104
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 8Y39|1|A|G|2807
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y39_104 not in the Motif Atlas
- Homologous match to IL_7A0S_093
- Geometric discrepancy: 0.0875
- The information below is about IL_7A0S_093
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8Y39|1|A|U|2663
8Y39|1|A|U|2664
8Y39|1|A|G|2665
8Y39|1|A|A|2666
8Y39|1|A|G|2667
*
8Y39|1|A|C|2801
8Y39|1|A|A|2802
8Y39|1|A|A|2803
8Y39|1|A|G|2804
8Y39|1|A|A|2805
8Y39|1|A|U|2806
8Y39|1|A|G|2807
8Y39|1|A|A|2808
8Y39|1|A|G|2809
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL3
- Chain H
- Large ribosomal subunit protein uL13
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