IL_8Y39_110
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAUAAG*UGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 8Y39|1|A|A|2792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y39_110 not in the Motif Atlas
- Homologous match to IL_4WF9_104
- Geometric discrepancy: 0.1065
- The information below is about IL_4WF9_104
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
8Y39|1|A|G|2764
8Y39|1|A|A|2765
8Y39|1|A|U|2766
8Y39|1|A|A|2767
8Y39|1|A|A|2768
8Y39|1|A|G|2769
*
8Y39|1|A|U|2789
8Y39|1|A|G|2790
8Y39|1|A|A|2791
8Y39|1|A|A|2792
8Y39|1|A|G|2793
8Y39|1|A|C|2794
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL36
- Chain G
- Large ribosomal subunit protein uL6
- Chain H
- Large ribosomal subunit protein uL13
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