IL_8Y39_157
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y39_157 not in the Motif Atlas
- Homologous match to IL_5J7L_038
- Geometric discrepancy: 0.1376
- The information below is about IL_5J7L_038
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8Y39|1|a|G|896
8Y39|1|a|G|897
8Y39|1|a|A|898
8Y39|1|a|G|899
8Y39|1|a|U|900
8Y39|1|a|A|901
8Y39|1|a|C|902
8Y39|1|a|G|903
*
8Y39|1|a|U|914
8Y39|1|a|G|915
8Y39|1|a|A|916
8Y39|1|a|A|917
8Y39|1|a|A|918
8Y39|1|a|C|919
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- Small ribosomal subunit protein uS12
Coloring options: