IL_8Y39_160

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

8Y39|1|a|C|943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_160 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1778

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8Y39|1|a|G|942
8Y39|1|a|C|943
8Y39|1|a|A|944
*
8Y39|1|a|U|1390
8Y39|1|a|U|1391
8Y39|1|a|C|1392
8Y39|1|a|C|1393
8Y39|1|a|C|1394

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain g

Small ribosomal subunit protein uS7