IL_8Y39_173

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCAG*CAAAUC

Length

10 nucleotides

Bulged bases

8Y39|1|a|A|1267, 8Y39|1|a|A|1290, 8Y39|1|a|U|1291

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_173 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1304

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8Y39|1|a|G|1265
8Y39|1|a|C|1266
8Y39|1|a|A|1267
8Y39|1|a|G|1268
*
8Y39|1|a|C|1287
8Y39|1|a|A|1288
8Y39|1|a|A|1289
8Y39|1|a|A|1290
8Y39|1|a|U|1291
8Y39|1|a|C|1292

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

Small ribosomal subunit protein uS3

Chain j

Small ribosomal subunit protein uS10

Chain n

Small ribosomal subunit protein uS14B