IL_8Y39_175

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_175 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.148

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8Y39|1|a|C|1313
8Y39|1|a|G|1314
8Y39|1|a|G|1315
8Y39|1|a|A|1316
8Y39|1|a|U|1317
8Y39|1|a|U|1318
*
8Y39|1|a|A|1339
8Y39|1|a|U|1340
8Y39|1|a|G|1341
8Y39|1|a|A|1342
8Y39|1|a|A|1343
8Y39|1|a|G|1344

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

Small ribosomal subunit protein uS13