IL_8Y39_193

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUAG*UGAUUU

Length

11 nucleotides

Bulged bases

8Y39|1|A|U|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_193 not in the Motif Atlas

Geometric match to IL_8B0X_119

Geometric discrepancy: 0.3473

The information below is about IL_8B0X_119

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38862.5

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8Y39|1|A|G|1480
8Y39|1|A|A|1481
8Y39|1|A|U|1482
8Y39|1|A|A|1483
8Y39|1|A|G|1484
*
8Y39|1|A|U|1598
8Y39|1|A|G|1599
8Y39|1|A|A|1600
8Y39|1|A|U|1601
8Y39|1|A|U|1602
8Y39|1|A|U|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains