IL_8Y39_195

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

8Y39|1|A|G|2019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_195 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0912

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8Y39|1|A|G|1710
8Y39|1|A|G|1711
8Y39|1|A|A|1712
8Y39|1|A|A|1713
8Y39|1|A|C|1714
8Y39|1|A|U|1715
8Y39|1|A|C|1716
8Y39|1|A|G|1717
8Y39|1|A|G|1718
*
8Y39|1|A|C|2017
8Y39|1|A|U|2018
8Y39|1|A|G|2019
8Y39|1|A|U|2020
8Y39|1|A|C|2021

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain I

Large ribosomal subunit protein uL14