IL_8Y39_203

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

8Y39|1|A|U|1568

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y39_203 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.2105

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8Y39|1|A|U|1512
8Y39|1|A|A|1513
8Y39|1|A|A|1514
8Y39|1|A|G|1515
*
8Y39|1|A|U|1565
8Y39|1|A|G|1566
8Y39|1|A|A|1567
8Y39|1|A|U|1568
8Y39|1|A|G|1569

Current chains

Chain A

23S ribosomal RNA

Nearby chains