Loop IL_8Y5K

3D structure

PDB id: 8Y5K (explore in PDB, NAKB, or RNA 3D Hub)
Description: E.coli transcription translation coupling complex in TTC-A state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.9 Å

Loop

Sequence: CAGGAUGUUGGC*GCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUG
Length: 45 nucleotides
Bulged bases: 8Y5K|1|1|U|1061, 8Y5K|1|1|A|1084
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8Y5K|1|1|C|1053
8Y5K|1|1|A|1054
8Y5K|1|1|G|1055
8Y5K|1|1|G|1056
8Y5K|1|1|A|1057
8Y5K|1|1|U|1058
8Y5K|1|1|G|1059
8Y5K|1|1|U|1060
8Y5K|1|1|U|1061
8Y5K|1|1|G|1062
8Y5K|1|1|G|1063
8Y5K|1|1|C|1064
*
8Y5K|1|1|G|1074
8Y5K|1|1|C|1075
8Y5K|1|1|C|1076
8Y5K|1|1|A|1077
8Y5K|1|1|U|1078
8Y5K|1|1|C|1079
8Y5K|1|1|A|1080
8Y5K|1|1|U|1081
8Y5K|1|1|U|1082
8Y5K|1|1|U|1083
8Y5K|1|1|A|1084
8Y5K|1|1|A|1085
8Y5K|1|1|A|1086
8Y5K|1|1|G|1087
8Y5K|1|1|A|1088
8Y5K|1|1|A|1089
8Y5K|1|1|A|1090
8Y5K|1|1|G|1091
8Y5K|1|1|C|1092
8Y5K|1|1|G|1093
8Y5K|1|1|U|1094
8Y5K|1|1|A|1095
8Y5K|1|1|A|1096
8Y5K|1|1|U|1097
8Y5K|1|1|A|1098
8Y5K|1|1|G|1099
8Y5K|1|1|C|1100
8Y5K|1|1|U|1101
8Y5K|1|1|C|1102
8Y5K|1|1|A|1103
8Y5K|1|1|C|1104
8Y5K|1|1|U|1105
8Y5K|1|1|G|1106

Current chains

Chain 1: 23S rRNA

Nearby chains

Chain 0: Elongation factor G
Chain F: 50S ribosomal protein L36
Chain f: 50S ribosomal protein L6
Chain i: 50S ribosomal protein L11

IL_8Y5K_040