IL_8Y5K_050

3D structure

PDB id

8Y5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-A state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

8Y5K|1|1|U|1584

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5K_050 not in the Motif Atlas

Geometric match to IL_5J7L_294

Geometric discrepancy: 0.2978

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8Y5K|1|1|U|1415
8Y5K|1|1|G|1416
*
8Y5K|1|1|C|1582
8Y5K|1|1|A|1583
8Y5K|1|1|U|1584
8Y5K|1|1|C|1585
8Y5K|1|1|A|1586
8Y5K|1|1|G|1587

Current chains

Chain 1

23S rRNA

Nearby chains