IL_8Y5K_136
3D structure
- PDB id
- 8Y5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-A state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.9 Å
Loop
- Sequence
- CGGCUAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y5K_136 not in the Motif Atlas
- Geometric match to IL_5J7L_024
- Geometric discrepancy: 0.1446
- The information below is about IL_5J7L_024
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
8Y5K|1|3|C|504
8Y5K|1|3|G|505
8Y5K|1|3|G|506
8Y5K|1|3|C|507
8Y5K|1|3|U|508
8Y5K|1|3|A|509
8Y5K|1|3|A|510
8Y5K|1|3|C|511
*
8Y5K|1|3|G|540
8Y5K|1|3|G|541
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S4
- Chain Q
- 30S ribosomal protein S12
Coloring options: