IL_8Y5M_055

3D structure

PDB id

8Y5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5M_055 not in the Motif Atlas

Geometric match to IL_5J7L_300

Geometric discrepancy: 0.2432

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8Y5M|1|1|U|1474
8Y5M|1|1|G|1475
8Y5M|1|1|U|1476
8Y5M|1|1|A|1477
8Y5M|1|1|G|1478
*
8Y5M|1|1|U|1513
8Y5M|1|1|G|1514
8Y5M|1|1|A|1515
8Y5M|1|1|G|1516
8Y5M|1|1|G|1517

Current chains

Chain 1

23S rRNA

Nearby chains