IL_8Y5M_072
3D structure
- PDB id
- 8Y5M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UUAAUUGAUG*UUGAUCGAAG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y5M_072 not in the Motif Atlas
- Geometric match to IL_5J7L_387
- Geometric discrepancy: 0.0998
- The information below is about IL_5J7L_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61249.1
- Basepair signature
- cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8Y5M|1|1|U|1851
8Y5M|1|1|U|1852
8Y5M|1|1|A|1853
8Y5M|1|1|A|1854
8Y5M|1|1|U|1855
8Y5M|1|1|U|1856
8Y5M|1|1|G|1857
8Y5M|1|1|A|1858
8Y5M|1|1|U|1859
8Y5M|1|1|G|1860
*
8Y5M|1|1|U|1882
8Y5M|1|1|U|1883
8Y5M|1|1|G|1884
8Y5M|1|1|A|1885
8Y5M|1|1|U|1886
8Y5M|1|1|C|1887
8Y5M|1|1|G|1888
8Y5M|1|1|A|1889
8Y5M|1|1|A|1890
8Y5M|1|1|G|1891
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain a
- Large ribosomal subunit protein uL1
Coloring options: